Hi Van,
I'm also interested in this question, I don't have a great
answer but I'll give my input. It has been shown that most plants grow better in diffuse light, i.e, when it's cloudy. Based on this, if you're living in a cloudy climate, like back East, the light is already often diffused by the clouds, so you would want maximum light transmission through your glazing, suggesting that clear would be best. But if you live in an exceptionally sunny location, you may want to diffuse some of that light while entering the
greenhouse. Less overall light may not be a bad thing if what's available is more usable and you're not limited by lack of sunshine.
Also, I think which is best sort of depends on the design of the greenhouse. It sounds like you are building an earth sheltered greenhouse with an insulated north wall? If so your overall glazing is less, thus you may want more transmission, i.e. clear glazing. What is the ratio of growing space versus glazing?
http://www.builditsolar.com/Projects/Sunspace/sunspaces.htm
This is an awesome website with some good info and links that could help out. I'm no expert, but I'll be building at least two greenhouses this year, so I'm in the middle of doing research to find out what works best in different situations.