Yes it will be above 48v. Charging is only done when the voltage is higher at the alternator than the battery. The voltage pushes it there. It is like
water that is in two buckets that are connected at the bottom with a pipe. If you fill one the other will fill until they are equal.
The voltage for battery charging depends on the type of batteries. Lead acid is usually between 54 and 56 volts set by a regulator.
I just finished a
project using 2 x 48v x 200amp alternators. I used a mechanical regulator to control both fields/alternators at the same time. The 48v nominal
solar power is quite common here. Inverters react much quicker with the higher voltage and the line sizes are smaller. Brushless permanent magnet are my favorote.