Color arises in 4 different areas of a corn kernel, listed from most superficial to deepest. The color of a superficial layer may hide the deeper colors.
Sap Color: A maternal only trait -- A water soluble purple pigment in the sap of the plant colors every tissue in the kernel, cob, and leaves. Tones of purple which appear black at high concentrations. This trait can overwhelm any other colors. Offspring may or may not inherit this trait. If a kernel carries this trait only from a pollen donor, it won't show up until the next generation. When homogeneous, this trait tends to harm productivity of the population.
Pericarp: The seed coat. Maternal tissue only -- tones of pink, rust, orange carried in transparent tissue. Chin-marking or color-gradients form in this layer. Offspring may or may not inherit this trait. If a kernel carries this trait only from a pollen donor, it won't show up until the next generation. The fickle nature of this trait, makes it difficult to stabilize.
Aleurone: A single layer of transparent cells immediately adjacent to the seed coat. Color changes based on the pollen donor. Tones of blue and gray. Triploid tissue, therefore final color depends on three sets of genes. Some offspring will inherit this trait.
Endosperm: The deepest layer. Tones of white, yellow, or orange. Triploid tissue, therefore color depends on three sets of genes. Some offspring will inherit this trait.
See also:
https://permies.com/t/116092/Xenia-Effect-corn#944946