I have 70 fruit trees in very dense clay on a sloping hillside and they are doing fine. Mature trees will have an almost mirror image of their roots below ground, so your trees will get below the fill and into the natural soil pretty quickly. I wouldn't worry about it too much. Just keep an eye on them while they are young, make sure the water does not
pond around the trunks, make little run-off trenches so you can see the water flowing on down the hill. Once the trees are 6-8 feet tall they will be into the
native soil.
Don't overwater when the trees are young. The clay topsoil will hold water longer, which is a good thing, and your trees will be less stressed. Stick your finger down into the clay, or use the shovel to see if the clay is wet 6" down, and if it is, hold off a little before watering. Clay is also full of minerals that add nutrition and flavor to your fruit. If you mulch the top, use leaf and
straw mulch, mowed weeds, manure, the worms will come up and aerate the clay nicely.
I would be more concerned about
mice and rats chewing the trunks of young trees, girdling, so don't give them mulch to hide in near the trunk. Keep mulch a good forearm distance away so they will not want to be in the open. This will also allow you to see any ponding of water. I wrapped the trunks loosely with the netting that bulbs come in, and that kept the chewing to a minimum.
An important distinction: Permaculture is not the same kind of gardening as organic gardening.
Mediterranean climate hugel trenches, fabuluous clay soil high in nutrients, self-watering containers with hugel layers, keyhole composting with low hugel raised beds, thick Back to Eden Wood chips mulch (distinguished from Bark chips), using as many native plants as possible....all drought tolerant.