From what I can see you have a problem with the "draw" required to get the air headed in the right direction. The door needs to be sealed to the can; with the stamping detents and the hinges you will have air flowing OUT of the stove before the flue gets hot
enough to draw. Seal the door with fireplace gasket or the like. The door is so large and reaches so high up in the can that it will always be a problem, it
should extend no higher than 1/2 way up.
I'm guessing that the "mouse hole" you refer to are the two pie shaped holes on the end of the can. You need to have a way of adjusting them so as to control the inlet air. A wheel with cut outs to match the holes already there that can rotate to close them off would work.
The exit port of the stove pipe is below the top of the can because of the placement of the spout hole. You should probably try to build a ceiling to block off that extra area above the bottom edge of the vent stack.
Always make sure that your flue damper is wide open when starting the stove. And an extra .5 m of flue wouldn't hurt. They make expandable nested flues for camp stoves where each section nests inside the next. You may want to look into something like that.