I've heard of other people wanting to have a longer combustion chamber but haven't seen the results or their experiences. I don't believe a longer combustion chamber will negatively affect draw so long has you have a insulated tall heat riser. I see one potential problem of
ash build-up choking the system as the ash will tend to get pulled to the back of the combustion chamber and start to block the heat riser/combustion chamber intersection. If you clean the combustion chamber regularly this probably won't be a problem.
I also believe your barrel temperatures will be colder than the standard design as the barrel is much farther from the combustion chamber and the heat of combustion will be absorbed in the larger J-tube mass. Your proposed system will probably take longer to heat-up and start-up.
Your logic of increasing the cross-sectional area to compensate for the longer burn tunnel will decrease pressure loss. Yet, if you increase the the cross sectional area of your heat riser you will want to keep the same cross sectional area throughout the rest of the entire system.