Susan, if there is high-nitrate fertilizer coming from a large commercial farming operation that is getting into the water, you can test the water for that. It can be filtered out pretty well with a charcoal filter that can be connected in the water line before it goes into a tank. If there's no tank, then just an inline water filter before the faucets. Nitrates and nitrites are what are also in high levels in cured meats like bologna, salami and bacon, and those aren't turning out to be good things.
If it's a
dairy farm and they are giving the cows hormones and antibiotics, or there's a chance of e. coli getting into the water from dense piles of manure, then it's best to use the water on landscape plants only, not even fruit
trees. You'd probably need a lab to determine levels of those substances.
What's the source of the contamination you are suspecting? Or maybe the question is, how big of an operation is it, and how far away is it? Are you sure you are "downstream" from it?
An important distinction: Permaculture is not the same kind of gardening as organic gardening.
Mediterranean climate hugel trenches, fabuluous clay soil high in nutrients, self-watering containers with hugel layers, keyhole composting with low hugel raised beds, thick Back to Eden Wood chips mulch (distinguished from Bark chips), using as many native plants as possible....all drought tolerant.