In germany exists a method to raise the Red Mason Bee (Osmia rufa) in wooden stacks. Basically the nesting tubes are replaced with 15mm thick wooden boards, in which grooves of 8mm depth are running in parrallel (distance 10 mm). Theese boards (16x16 cm) are stacked, so that each groove is closed with the flat side of the next board. Every 20 boards or so are tied together to form a block with 200 nesting tubes. If you need to clean the boards (or want to harvest the cocoons), you can untie the stack. As the grooves are open, it is pretty easy to savely remove the cocoons and clean the boards. You could use a hot air gun (after mechanical cleaning), you could heat theese boards to a minimum of 50°C for some hours, or cool them down to -70°C (the last beeing not practical unless you have easy access to liquid nitrogen)
It is most imortant, according to the orinial authors, to keep the nesting boards clean to prevent against pests. This means you remove old pollen and dirt with a strong brush to prepare the boards for each nesting season. The authors remove the bee cocoons from the boards systematicaly, to clean the boards and remove fly larvae and other pests.
For those who can read german, here is a link to the method:
http://www.bienenhotel.de/Handbuch_der_Mauerbienenzucht.pdf