I can't say I've seen or had any experience about this with roosters, but I do enjoy learning and reading about anything biochem., biology, ecology, or
permaculture related. If the testes inside are black and you have more than one rooster and they have gotten into fights before, the testes may have undergone necrosis because of the damage. And you just so happened to cull the rooster before the testes had time to be reabsorbed back into the body which is what some internal organs do when they die (no place else to go). Some other organisms' males will fight and hurt each others' genitalia; pretty much all organisms that produce sexually. I can't think of any organisms that sexually reproduce that don't have males fighting each other. Now, if the scrotum (skin outside covering the testes) of the rooster was black, it may have a gene mutation or two from the
Silkie chickens or had scaring and tissue damage from fights or disease. I read a lot about a lot of things and learn about many people would say "what the??" about which is why I plan to do Biochem. in college (or a closely related field). I had to make it clear how weird I am.