Good question! I think that the vaccine debate is a little bit hot though. I would personally say yes; epigenetics and the active change and mutation of our living DNA. Vaccines, like anything you take into or expose the body to, can actively influence your DNA. So intaking foods that have vaccine-influence may, over time, begin to influence your DNA as well. Just my own opinion here. I'd avoid it like the plague. But there's gonna be lots of people who insist it's totally fine and won't affect you to any degree, except to help keep your birds healthier and meat 'cleaner'.
Salmonella shouldn't be a problem unless you've got filthy, stressful living conditions or tainted water or feed, IMO.
Marek's can be a big problem if it shows up. But it's passed horizontally; from bird to bird, and it can linger in the environment even if infected birds are destroyed. If Marek's isn't present on your property, if the chicks you bring in do not have Marek's, and if you're not bringing in new birds from other farm, you're not going to get Marek's.
IBD is a new one to me. I just looked that up. Looks like another horizontal transmission immune disease. I don't know much about it though.
Everyone's got a different opinion on this. My opinion is get a clean flock and close it. No new birds. Hatch your own eggs, hatch eggs you buy from others, and keep your birds isolated and clean
