My forest garden and my annual garden are separate; but also together. Basically, the southern and western borders of the forest garden are also the northern and eastern borders of the annual garden (can try to get some photos to better explain). Eventually, as the trees and perennials grow larger and cast more shade over the annual garden, I will begin to transition that area to become part of the forest garden and create a new annual garden in a new spot.
As for mixing, I do have many annuals and biennials in the forest garden. Most of it is volunteer stuff, since I use bolted/spent annuals as mulch in the forest garden after chopping them down in fall; but I also put bush beans, kale, and climbing cucurbits in the forest garden where I see open spots that weeds might try to take advantage of if something else doesn't get growing there. Also, I always start way too many seedlings each spring to fit in the annual garden so the extras often find themselves in the forest garden, wherever I can squeeze them in.
