Hi, Brett! You're not the first to see the need for such a resource. The best compilation I know of is the Natural Capital Plant Database,
http://www.permacultureplantdata.com , which makes an effort to document the published source of every claim it makes. However, that's not
enough, because as you've found, many of the published sources don't provide sources for their own claims! Much of the data is anecdotal, and even when a thorough, scientific study shows that plants grow well together, there's rarely a mechanism proposed for how that relationship works.
For my money, I believe Dr. Elaine Ingham is closer to the truth with her research into soil microbes and microbiomes than any of the traditional research. Rather than plant A directly helping plant B and inhibiting plant C, it seems more likely that plant A is fostering a microbiome that is amenable to plant B and hostile to plant C. The research to prove such a causal connection will necessarily involve a lot of microscopes and a lot of patience, neither of which I personally have, and I think a lot of other permies are also lacking these resources.
So what we need is some kind of institute for
permaculture soil research. Maybe it could be crowd funded and distribute its published results as a benefit to the donors. Maybe you could be the one to start it!