treat it and clean off the mold before you seal up the area. I have used this product,
https://moldzyme.com/ to clean off mold in a ceiling area, I ripped off the drywall, exposed the
wood, and treated with this. I am generally chemically sensitive, but had no problems with this product, and it worked.
treat with the moldzyme once you can keep it from getting wet, so, do not seal up the area before drying it out, even if you have to move in, leave that area open ( no insulation or drywall yet). Do not put in insulation and then run the
wood stove to dry out. Also, this way you can inspect the area and will know you have solved the problem.
As far as the future, you need to have a design so that moisture never builds up in areas of your house. It will help once the building is finished and dry . People try and address this in different ways, and different ways depending on what part of the country. I would find out what is code for roofs in your area, and what works for other peoples houses in your climate zone. It doesnt matter that your walls are
cob or straw bale and theirs is plywood, because it sounds like you are making a standard type roof. Some people advocate
alot of of air flow and venting, although to me in your area that seems like it would be counter productive, even though that is commonly done here. The way I like to do it in my house is to insulate directly on the bottom of the roofing deck and not vent at all, and that way I do not have moist warm air hitting the cold underside of the roofing deck and condensing. This means I use nasty foam and foam boards. This foam is directly on the underside, on the plywood, with no air hitting the plywood, and there is no exterior venting to let in cold moist air, so the area on the house side of the foam is at house temperature and humidity. So then it is no more likely to mold that the walls or other areas of the house. But, there are different trains of thought on how to solve this