My only concern is that the curved glass section will receive a different stress load than it was designed for. All of your support beams support it well as it sits now, but (assuming an "A" shaped roof) it will receive all of the load from both halves now, causing a bending action along the length of the curve. I would recommend reenforcing the ends, and putting a support beam along the length of the middle to accommodate anything nature might throw at you. Other than that, it sounds like a wonderful approach.
Are the panes vacuum sealed, or simply double paned with an air-gap? In the even that they are vacuum sealed, be very careful when moving the entire structure so you don't break the seals
