Yes, more mass can absorb more heat. But this won't be the only physical phenomenon at play. There is also the
conductivity of materials to consider. Air is a order of magnitudes better at insulating than water (and ice), so having that water nearly exposed to the winter (though a thin layer of glass) would actually act as a thermal bridge to planter and root mass, allowing the heat stored in the planter to be conducted back into the winter air much more quickly than if there was an air pocket.
The planter wall will already be interfacing with the mass of the earth, so the additional mass off water in bottles would be inconsequential, what you are really after is insulating the planter from the winter. If you feel you need solar gain, consider making the front of the planter a Trombe wall.