summerstripes wrote:
Does the presence of GM corn in the diet of the cattle affect the quality of the manure, or my soil?
the GM nature of the corn itself won't be the issue. after passing through the cows, the genetic material isn't in a form that should be able to cause problems. the real issue will be biocides that were sprayed on any of the feed, whether it's on the corn, on the alfalfa, or on the pasture. several of those can and do survive cows' guts to cause problems in your garden.
asking the farmer what he sprays on the pasture is a good place to start. some expensive lab testing might be the only way to know for sure if the stuff can be cleaned up sufficiently. the USDA organic standards are fairly lax, though. I'm not sure exactly what period of time is required, but manures only need to be aged before they can be applied to organic land, regardless of whether or not the manure came from organic animals. one of the great many problems with the USDA standards.
generally, the more critters and microorganisms that you can get involved, the safer you'll be. sounds like you got an effectively unlimited supply of manure. in your shoes, I might build a big soldier fly larva bin to make food for poultry or fish, then run the larva residue through worms, then age that a bit before putting it in your garden. that would decrease the final volume pretty dramatically and add several steps to the process, but it would also expose nefarious chemicals to a variety of conditions that could break them down, and feed more livestock in the process. soldier fly larvae are pretty tough critters, so they're more likely to handle any fresh nastiness better than worms.
you might decide that that's more trouble than you want to go to, though. and it really might not be, depending on whether the cattle feed actually has any chemical residue on it.
another option would be to compost a batch of manure and see how various plants and soil critters react to it. if they're all sick and dying, you'll know to be concerned. if they're thriving, chances are good you're in the clear.