Yes, I was also going to say, eat them!
If you've got "really bad clay soil" and these sow-thistle roots are going all over the place down inside of it, that sounds like it might be a good thing... So pulling the above-ground off on a regular basis along with a bit of
root might reduce size and spread of the sow-thistle and allow you to get other things established. I'm not sure, but sowthistle might be one of those weeds that loves to occupy "disturbed soil", and might reduce in vigor as you get other perennials covering your soil, and no further digging over time. On our canal sides, the sowthistle is one among many things growing there, and doesn't try to take over.