Hi,
Interesting challenges, and questions.
Regarding your white corn population: Yes, theoretically it is possible to see pollination from other, commercial yellow (gmo…) corn. The only exception is if the yellow corn itself is a hybrid between a yellow and a white corn, then not all seeds would be coloured. This could for example happen if a neighbour replants the own seeds year after year instead of buying commercial seeds. If you have a sufficient population and diversity, you won't need to bring in new varieties every few years, you can let the population evolve on your land.
Regarding your blue corn questions, I am not sure I got them right. However, a quick internet search showed that the blue corn colour can be either in the pericarp (maternal seed coat) or the aleurone layer (derived from fertilization), and that it is based on several dominant genes, (at least 2) which must both be present to have a blue corn.
Therefore, if you plant your blue corn together, it will have a higher likelihood of producing blue cobs. To create a fully blue population without any other colour, the process depends on the genetics, if it is a blue pericarp or blue aleurone corn that you want, and have genetics for. If it is a blue aleurone, you increase the speed of selection if after a year or two you only take cobs which are entirely blue, instead of blue kernels in multi-colour cobs. As you see the colour only after pollination, you could do manual crosses between all the plants, always 2 plants pollinating each other, and then take only the cobs of couples which are entirely blue. Would require a lot of work, but then you have a start without other colours.
As for which one to detassel (blue or white) to create your population: It depends on your priority. If you want to keep your white population and have an experimental blue population, then you can detassel the blue population. This sets you back one year in the blue population, as then you have less blue in there, but you keep your white one. Detasseling the white one means that you lose your white population, setting you back there.