I think crop rotation is not something that fits in with permaculture/polyculture.
Let's suppose you do a monocrop of carrots. Then all the bad guys that loooooove carrots have built up in the soil. Plus the soil has been depleted of stuff that carrots really love. So if you grow carrots in the same spot next year, they'll suck.
In a polyculture, the carrot grew by itself next to 40 other things. The next carrot was several feet away. Because there was only one carrot, there was no build up of bad guys and the soil did not get depleted in stuff the carrot really loved. You can plant another carrot in the exact same spot (although that would be weird) the next year and it would be fine. But odds are that it will be a bit random and you won't have a carrot in the same spot.
Container planting is tough. It is really hard to do companion stuff in a container, let alone a rich polyculture.
My mind keeps trying to suggest "garlic chives".
Hmmmm ... I think there was another discussion about something similar in the past ...
Here it is - third post