Hi Collin,
Boy, I wish I could tell you that it makes a real big difference and it is important where you place the entrance holes. However, within reason, it is 6 of one, half a dozen the other. I've had them in both locations but if you made me make a choice one way or the other I would make center holes. Dusko is right, center entrances require two follower boards, which really isn't that big of a deal. Bees are incrediably adaptable creatures with minds of their own sometimes. On one of my earlier Phil Chandler design Top Bar hives with center entrances, the bees worked down to one end and found a small crack in my construction at the end and actually, over that summer, enlarged it. That opening became as popular with the bees as the center 3 holes. So technically they made their own end entrance. One note, the crack opening was at the south facing end of the hive and usually sun warmest end of the hive. If you aren’t sure what entrance style you would like, I suggest you build two Top Bars identical, put the entrance in the middle on one and the entrance on the end on the other and keep us posted on your experience.
Ain't beekeepin' fun