My wife is concerned about the effect of the unyielding hardwood floor on their tootsies,me,not so much.
The hard floor is much less of a problem than the wire cage floor they are more commonly subjected to.
Thank you William Bronson for confirming their toilet habits. We had breeding hutches with half the floor wood and half hardware mesh for the droppings and urine to go into the garden bed below. There was a nest box in one corner of the floor area which was the length of the rabbit square with a six inch board across the front. They would select the bedding for their nest box from the hay or grass wee fed them and then line it with the furr they pull out from under their chin. often if we put bedding in the box they would dig it all out and start over with what they wanted. They tended to sweep the wood floor clean to rest on rather than the bedding.
When the bunnies were ready to be separated from the mother they went into a pen built to the detentions of one 12 foot sheet of metal roofing which opened with hinges on one side. It had a V manger made from fencing that had openings that were 1.5 X 3 inches originally from a chicken barn for the chickens to stick their heads through to get feed and water so the farmer did not have to go inside. The floor was the hardware mesh bent up 2 inches on each side and the ends so no droppings would get wedged between the wire and the wood. Again this was placed over a future garden bed with legs 16 inches long. Two batches of bunnies could be in the pen and when they got a little older they would be separated with the grills o one side and the boys on the other.
They would be fed the same grass or hay and branches as the goats Therefore part of the farm routine. This was during the 1950's then again during the 1970-80 when I returned home. I hope these experiences help you with your permaculture plans. This was in the days of Rodale and Mother Earth News but much of the same homestead planning..