posted 8 years ago
If your basement is well sealed, and the house is warmer than the outdoors, air will want to rise and leak out of any cracks in the upper floor or ceiling. The only way new air can come in to make up for the leaks will be through your basement flue, as you noted.
One thing to do is make sure there are as few leaks near the top of your house as possible, reducing the inward draw in the basement. You might need a makeup air vent to allow fresh air to come in near the stove.
Another thing, as mentioned, is to make the chimney at least as tall as the ridge of your house. If it is any shorter, it might not be able to draw strongly enough to reliably overcome the "stack effect" (google it) of the house. Any wind blowing against the side of the house where the chimney ends will increase the outside pressure and try to make the chimney run backward. And insulating the exterior chimney, even if not need for condensation, will help the chimney stay warmer and increase the draft to help resist downdrafts.
By far the best way to route a chimney is straight up through the house, exiting near the ridge. This lets all the heat benefit the house, and improves the draft quality.