At the moment, the things that come to my mind are:
-Excel
*you have your 365 days per year and one day per row
*every year could be a new column
-loose leaf paper and folders
*separate every folder into months
*date every paper and stick it into the appropriate folders
*use an appropriate grouping and organizing strategy for yourself and how your mind works within each month's folder (or more broad and organize by season and/or
phenology)
*(I don't have a biotime journal, but for organizing my own personal records and notes I prefer reverse chronological order with grouping by months or by semester)
*an example organization tree might look like this:
>>Separate folder for each month
>>>Individual loose leaf papers for each day
>>>>hole punch and tie same days from different years together with string (more work) or tie full month from one year together (less work)
-there's probably more out there, but this is what hits my mind first