I believe the source of the pathogens aren't so much the row covers, but are in the soil. I think a focus on promoting beneficial soil fungal and bacterial life through such things as quality
compost, leaf molds and earth worms & their castings for examples will target the source of the pathogens by keeping them from gaining the upper hand and yield better results in the next growing season compared to just sanitizing row covers. I do think the row covers could indeed harbor dormant pathogenic spores, and while I think sunlight is great at killing actively growing things like molds and some fungals, microbial spores have evolved to survive things like sunlight and go on to live another season. I believe one option that can be effective in sanitizing this row cover is by removing and destroying spores in a brief soak in vinegar, or better, alcohol.