I wouldn't worry too much about covering them. Just be sure the top covers are secure so they don't blow off.
If they are in an exposed location, perhaps set up some kind of wind block for them, if possible (ie: haybales or cord
wood piles).
From my
experience, most of my colony winter die-offs have been due to damp/wet/moldy hives (poor air circulation = condensation).
Keep an eye open for moisture build-up on underside of top cover. Maybe look into making or getting a "quilt box" for the top if you start to notice any condensation.
Another method is to lay a few popsicle sticks between the inner cover and top cover to add a bit of air flow.
A
local bee keeper also recommended treating
bees for varroa in the Fall to increase their odds getting through winter.
I've used Apivar for this before, it's good for when the
honey supers are off and the bees no longer have capped brood.
I personally prefer not to use chemical treatments if I can get by without them, but I also figure a little preventative care is better than a dead hive.