Welcome to Permies!
I am not anywhere near well versed when it comes to plant diseases but this thread has peaked my interest. It is my understanding that diseases like Alternaria blight would exist both potentially on seeds and in the soil.
I'd almost want to skip fiddling with treating seeds and fighting to grow zinnias that might be vulnerable to blight and rather select seeds from my strongest zinnias in an effort to breed a blight-resistant strain that would do well regardless of soil/seed condition.
How long have you been growing your own Zinnias? It sounds like you might be well on your way already to doing that.
Maybe I am missing something, but I'd love to know more about your plans.
