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Adaptation Agriculture online course with Joseph Lofthouse-- looking for editors

 
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Hi seed savers and gardeners.. I was lucky enough to spend some days filming and working with Joseph Lofthouse on an upcoming online course about Growing Modern Landraces. I'm in the final stages of editing and content uploading.  I would LOVE a couple of volunteers that want to go through the course and give me feedback/do copy editing/help with promotion. Perks are you get lifetime access to all the content! There is another teacher on there too that will be super interesting for anyone already interested in seed saving and gardening.
Email me julia.dakin@gmail.com if you're interested in doing this.
Thank you so much everybody, awesome content on here.
Julia
 
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Thanks Julia. I had a lot of fun filming with you. Thanks for the top quality recording equipment and editing.
 
Julia Dakin
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What I lack in videography I make up for in effort!  This has certainly taken over my life recently and I'm so glad. It's revolutionary stuff
 
pollinator
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Well shucks, that sounds kind of interesting, but I don't think my metered internet connection and sub-par bandwidth is up to the task.
 
Julia Dakin
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@Mark Reed (or anybody else) I have a project for you that doesn't require bandwidth! If you're interested in this kind of thing. Here is part of a transcript from and interview with Dr James White about the science behind plants and local adaptation.   BUT-- maybe it's too technical? I feel like it has incredible information (if you can imagine this section below x 10)  but nobody has read it! Here I am feeling like I'm sitting on this crazy information and I can't get anybody to read it LOL.  So I feel like somebody needs to summarize it, somehow make it more digestable.  In the course, pre-ceeding this section of transcripts is a 45 minute presentation on endophytes, so there is some background for people.  Just email me let's talk more if you want

----
(Section of transcript)
Julia: A lot of what we're talking about when growing landraces is about saving seeds and replanting them in the same location year after year so that they can adapt to that soil, to the conditions, to the weather. The plant microbiome is essential in the process, can you expand on how plants use endophytes to adapt to local conditions?

Dr James White:  Plants are fishing microbes out of the soil, and they are training these microbes to do what the plant needs them to do.    What do I mean by ‘training’ them? Plants are feeding them with nutrients, they’re putting that into the soil around the roots.   Certain microbes are attracted to the nutrients, and then the plant takes them in to the roots.  But only certain microbes are compatible in that process. Certain microbes can become pathogens and the plant loses control of them, if there is no healthy community around the plant.

The plant has to get the genetic line of the microbes that it can get nutrients out of.  Enough of that microbe can then survive in order to stimulate, repair, develop and then be injected back to the soil (in greater numbers) to get more nutrients and then track back. That's the rhizophagy cycle, so it has to work in the rhizophagy cycle.

The plant is selecting those microbes that work best with it, in in its tissues. And so the microbe that is ideal for one plant, may not be ideal for the next, because the plant selected that microbe.  

JW: I would agree that it makes sense to get the varieties that are adapted to the local regions, for a lot of reasons.   Maybe the genetics of the plant is part of it, but the microbiome may be another part of it.    And I would also suggest that what is typically overlooked with plants, is that the microbes are a big part of the plant immune system, so if we get the right microbes in those plants, they're going to be resistant to fungi, and resistant to other kinds of pathogens.

If you get the right microbes in those seeds, then they're going to be able to acquire the right nutrients out of those soils that they're adapted to.  Where there is a history of growth in a specific location, they will have gathered particular microbes that enable them to get particular nutrients that are hard to get out of those soils.  The plants are adapted to that area. Part of the adaptation is getting the right  microbes that carry the right nutrients and the training those microbes for optimal performance in the plant. The plant really selects these microbes: If there's an iron deficiency in the soil, that the plants that are going to thrive in that soil are the plants that get the microbes who carry iron and bring it back to the plant, and those are the endophyte that do that. If you’re going to grow in that particular soil that is low iron, you want the microbes that can carry iron to be the endophytes in the plant. It's better to get plants that are adapted for a particular region, with their microbes adapted to that region, than plants from a far distant area. That doesn't mean you can't adapt a plant. You could get a plant from somewhere and start it growing in a different location. Typically, it doesn't grow as well at first, it takes some time to get it grow, but you could probably get the right microbes there.

When I was talking about plants taking microbes in, there's a selection that happens that I should say more about.   Let’s say if a plant acquires a microbe that is too oxidatively resistant, it's not susceptible to being controlled by the plant using super-oxide. What happens is that the plant doesn't grow. It doesn't reproduce, so it dies. Seedlings don't even grow. Or let's say they go into the plant, and they're resistant [to the super-oxide from the plant], they don't lose their cell walls when the plant puts superoxide on.  (Normally [in the rhizophagy cycle] what the plants do is put superoxide on the microbe and they lose the cell wall and become these naked protoplasts. The plant can then replicate these naked protoplasts, get nutrients out of them, replicate more and make a lot of them. And then they get ejected out into the root hairs, out of these little pores back into the soil).  Well, if they don't lose their cell walls, they don't replicate, so there's not a lot of them in there. And also, they can't be ejected out because the pores at the tip of the root hairs are really tiny things, and only a little naked protoplasm can go out of that root. So these ones that aren't responding, if they go in, they don't get replicated and ejected. The plant selects those out. It selects specifically for the ones that work with this process, and the ones that are bringing the right nutrients to it, enable the plant to then grow better, and then those plants, with those endophytes, they succeed. So there's a selection, they are training those microbes to work inside as endophytes, and then populating the soil with those microbes, so that the plant can thrive with getting more nutrients from those microbes.

It's a very important process, and almost automatic the way the selection works with these endophytes.  The plants really are selecting specific microbes, and cultivating those as endophytes, so they are managing those endophytes in that process called the rhizophagy cycle.

Julia: In my field, I have really high aluminum, low calcium and it’s acidic and sandy. And if I don't give the plant's calcium and compost, they don't grow, or they die. If I save seeds from the plants that grow year after year in that same soil, would the plants be able to teach the microbes to protect them from the aluminum and scavenge what little calcium there is, or, how much can I expect?

JW: Yes, there are endophytes that will carry a lot of calcium, but also that will carry a lot of aluminum. You don't want the aluminum ones,  you want ones that will take the aluminum and not bring it back.  You can find those endophytes that do that. I think what you would want to do in that case, is to find wild plants in soils with high aluminum and low calcium, and then get the endophytes from those plants.  Take some of the seeds from there, then plant those seeds with your seeds. That's my idea about planting the seeds together.  Try that, get the endophytes off of those seeds get them into your crop and see if you can get plants that are growing in that low calcium environment where you don't have to keep putting calcium in. You might you might see a big difference if you do that.

Julia:  Also If I’m I saving my seeds,  then after maybe three years,  then I should have trained endophytes and trained plants?

JW: I don't know how long it'll take. It took us a long time to screw up the microbiomes of  plants. We might not be able to get it back two or three years.  Walter [Goldstein] has put a lot of effort into it. He's actually added endophytes to his corn.  He told me he got some bio-stimulant endophytes from Brazil. He put different mixes of endophytes from sugar cane and some other crops in Brazil. So he's actually working hard to get those endophytes back into his corn, in addition to growing them in biodynamic conditions.      






 
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I might be interested. I'll let you know soon.
 
Joseph Lofthouse
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I'm really excited about the endophyte section of this video course. It's something that has been on the edge of my understanding for about 5 years. Julia's interviews helped me to fully grasp the endophyte connection and incorporate it into my understanding of how important the plants, animals, fungi, and microbes are to landrace gardening. I've always said that landrace gardening is about community. Because of Julia's wisdom, I have expanded my definition of community to include all the life-forms in the garden, and inside the plants.
 
pollinator
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Starting from an article like this one:  https://www.sciencedaily.com/releases/2019/12/191206100139.htm

.....and then pondering what we know, but more importantly *don't* know, about companion planting, one can imagine a bewildering array of interactions going one with all of that diversity and community encouragement.   The information contained in the linked article shows that a very well adapted community of bacteria can be selected on tomato leaves by transferring that community successively over several generations of a tomato line.  That community can become so well adapted that it outcompetes other microbes, some of which may in fact be pathogenic to the tomato.  But one could imagine as well a well adapted  community that is not capable of warding off a disease-causing invader.  I'm wondering if a case could be made or even has been demonstrated that a neighboring (companion?) plant may be capable of providing microbes to the tomato that, even if unadapted on tomato, would help it to ward off a pathogenic invader.  It's been noted that companion plants often attract beneficial insects that are predatory on 'bad bugs'......might companion plants also carry a galaxy's worth of microbes that impact their neighbors in such beneficial ways.  Over time, a companion plant-derived microbe that provides a sharp fitness advantage to the tomato may eventually become adapted, along with the other tomato microbe members, to the tomato plant surface.  And this is just addressing epiphytes on the plant surface......whole nuther level when you start talking the endophytic world of the plant above and below ground.

( see also https://www.pnas.org/content/117/2/808 for a brief description of the work and link to the original research article. )
 
Mark Reed
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I've just always operated on the assumption that the soil itself, for lack of a better word is alive. All kinds of bacteria, fungus and even virus lives there and I always kind of figured that in the long run it's probably better to protect it and keep it alive. I wonder if maybe, especially after WW2, the tractors and the plows and for sure the erosion, started washing away or killing a lot of the living layer, leaving behind hard pack and rocks.  

Maybe that's why chemical fertilizers, insecticides, fungicides and all the rest became "necessary" and ubiquitous. Or maybe that necessity was because you can't make money on something unless people believe they need it. I have a collection of material put out in WW1 and WW2 from the US War Garden Department, the war and victory garden campaigns. There is a lot and I mean a lot of extremely good information in that material but especially in later publications, always the obligatory, use X amount of X chemical.  Maybe the people who made the stuff had influence in publishing the materials just as the people who made cars influenced building the interstate highways. In any event the effect is the same in that even more of the natural micro life was destroyed.

I had never heard the term, endophyte before Joseph mentioned in another post but I guess encouraging them is sort of what I've been doing for a long time, but I would never in a million years thought of trying to import specific ones. I guess I've just been going on the assumption that they would show up on their own but why would they?

I don't have a microscope or a lab and wouldn't know what to do with them if I did so I will never know for sure but I'm wondering now if I can bring in some endophytes specific to beans. I have wild beans started from a local patch that grows not far from my place. If something came in on those seeds, I perhaps may have already imported it to my garden. I could also easily go and transplant some from the wild patch and bring some of that soil with them.  

Anyway, this endophyte thing has sparked my curiosity and especially with the beans being easily available I might have to try some experiments.
 
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Anyone know if endophytes survive in the freezer? As in long term storage of tender garden annuals? Some freeze tolerance must be present in our wild plants.
 
John Weiland
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Mark Reed wrote:.....I don't have a microscope or a lab and wouldn't know what to do with them if I did so I will never know for sure but I'm wondering now if I can bring in some endophytes specific to beans.....

Anyway, this endophyte thing has sparked my curiosity and especially with the beans being easily available I might have to try some experiments.



Although microscopes provide a level and quality of detail that molecular fingerprinting cannot, I do not feel we are far away from the time when you will be able to rinse a leaf surface or sample some soil from the roots of your plants into a small tube, deposit it either at a local pharmacy or your local overnight mail drop-box (think "23 and Me") and within a week get back a list of microbes.....AND their relative abundance in that sample.....inhabiting that leaf or root system.  When you see the word "ribo-typing", that is the current rendition of 'quick 'n dirty' molecular fingerprinting and is used to identify living things rapidly, -- to distinguish one bacterial species from another as well distinguishing bacterial from fungi, plants from humans, etc.  Due to the combined phenomenon of the human genome project, 'big data' initiatives, and recent pandemics, the global infrastructure for sequencing DNA/RNA has boomed.....with a concomitment decrease in price and increase in capacity.   It must be taken for what it is, however.....a way of identifying microbial species that we already *know*.  Thus, any DNA sequences that you get off of that leaf wash sample that you submit to the service will key out as "unknown" unless that sequence already matches with a known organism in the current databases of information.  [Quotation from a 2016 New York Times article: "May 23, 2016 — According to a new estimate, there are about one trillion species of microbes on Earth, and 99.999 percent of them have yet to be discovered ..."]  

So as you noted, it may not be that important to know exactly what is providing the growing/gardening benefit in your location, just that the manner in which you are planting this next to that, etc. is giving you a positive effect in a sustained manner over the decades. But I agree that it's fun to know!....


Joylynn Hardesty wrote:Anyone know if endophytes survive in the freezer? As in long term storage of tender garden annuals? Some freeze tolerance must be present in our wild plants.



Yes....with some cautionary notes.  "Endophytes" minimally as a group are comprised of bacteria and fungi of myriad species.  Some of these will be better as surviving through freezing than others....and even this will depend on the substrate in which they find themselves when the temperatures finally plummet.  So one species may be able to survive quite harsh freezing insults when they are in, say, zucchini tissue, but may be quite incapable of tolerating even short term freezing in a different plant or in the soil.  Many microbes of this type are spore-formers, however, and these structures allow them to survive harsh environments of all kinds, freezing included. For those species that may have numbers reduced to critical levels on account of freezing or other environmental shifts, there is always the possibility of re-populating the landscape through rainfall and other means of long distance travel and dispersal:  https://en.wikipedia.org/wiki/Bioprecipitation
 
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If you still need someone, let me know! I majored in English and my day job is creating online education.
 
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What is the deadline for this? Sounds interesting
 
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I emailed you Julia, but even if you have all the help you need I can't wait for this course to come out. It sounds great!
 
Julia Dakin
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Emily Spring wrote:If you still need someone, let me know! I majored in English and my day job is creating online education.


Sorry I missed this earlier,  but yes always need more! Can you email me julia.dakin@gmail.com
 
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